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PUBLICATIONS

Check out Google Scholar for a complete list of Dr Calabrese's publications and access to all articles.

If you are unable to access the full text of an article, please contact Dr Calabrese.

2023

  • M. Dulchavsky, R. Mitra, K. Wu, J. Li1 K. Boer, X. Liu, Z. Zhang, C. Vasquez, C. T. Clark, K. Funckes, K. Shankar, S. Bon-net-Zahedi, M. Siddiq, Y. Sepulveda, R. Suhandynata, J. D. Momper, A. N. Calabrese, O. George, F. Stull, J. C.A. Bardwell, Directed evolution unlocks oxygen reactivity for a nicotine degrading flavoenzyme, Nat Chem Biol, 2023, https://doi.org/10.1038/s41589-023-01426-y

  • H. Britt, R. Beveridge, A.N. Calabrese, A special issue of Essays in Biochemistry on structural mass spectrometry, Essays in Biochemistry, 2023, 67, 147

  • F. Paoletti, S. Covaceuszach, A. Cassett, A.N. Calabrese, P. Konarev, J. Grdadolnik, D. Lamba and S. G. Grdadolnika, Conformational switching in Intrinsically Unstructured Proteins by Small Endogenous Ligands: decreased local proNGF flexibility upon ATP binding, Protein Sci, 2023, 32, e4563

2022

  • M.J. Burke, J.N.F. Scott, T.C. Minshull, Z. Gao, I. Manfield, P.G. Stockley, A.N. Calabrese, J. Boyes, A bovine antibody possessing an ultralong complementarity-determining region CDRH3 targets a highly conserved epitope in sarbecovirus spike proteins, J. Biol. Chem., 2022, 298, 102624

  • B.J. Lane, B. Wang, Y. Ma, A.N. Calabrese, H. El Mkami, C. Pliotas, HDX-guided EPR spectroscopy to interrogate membrane protein conformational dynamics, STAR Protocols, 2022, 3, 101562

  • K. Wu, T.C. Minshull, S.E. Radford, A.N. Calabrese, J.C.A. Bardwell, Trigger factor both holds and folds its clients, Nat. Commun., 2022, 13, 4126

  • B. Schiffrin, J. Machin, T.K. Karamanos, A.E. Ashcroft, D.J. Brockwell, S.E. Radford, A.N. Calabrese, Dynamic interplay between the periplasmic chaperone SurA and the BAM complex in outer membrane protein folding, Commun. Biol., 2022, 5, 560

  • B. Wang, B. J. Lane, C. Kapsalis, J. Ault, F. Sobott, H. El Mkami, A. N. Calabrese, A. C. Kalli, C. Pliotas, Pocket delipidation induced by membrane tension or modification leads to a structurally analogous mechanosensitive channel state, Structure, 2022, 30, 608-622

2021

  • J. P. K. Bravo, K. Bartnik, L. Venditti, J. Acker, E. H. Gail, A. Colyer, C. Davidovich, D. C. Lamb, R. Tuma, A. N. Calabrese, A. Borodavka, Structural basis of rotavirus RNA chaperone displacement and RNA annealing, Proc Natl Acad Sci, 2021, 118, e2100198118, https://doi.org/10.1073/pnas.2100198118

  • P. White, S. F. Haysom, M.G. Iadanza, A. J. Higgins, J. M. Machin, J. M. Whitehouse, J. E. Horne, B. Schiffrin, C. Carpenter-Platt, A. N. Calabrese, K. M. Storek, S. T. Rutherford, D. J. Brockwell, N. A. Ranson, S. E. Radford, The role of membrane destabilisation and protein dynamics in BAM catalysed OMP folding, Nat. Commun, 2021, 12, 4174

  • R. Beveridge, A. N. Calabrese, Structural proteomics methods to interrogate the conformation and dynamics of intrinsically disordered proteins, Frontiers in Chemistry, 2021, https://doi.org/10.3389/fchem.2021.603639

2020

  • M. G. Iadanza, B. Schiffrin, P. White, M. A. Watson, J. E. Horne, A. J. Higgins, A. N. Calabrese, D. J. Brockwell, R. Tuma,  A. C. Kalli, S. E. Radford, N. A. Ranson, Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs, Commun. Biol., 2020, 3, 766

  • J. H. Tomlinson, A. P. Kalverda, A. N. Calabrese, Fusidic acid resistance through changes in the dynamics of the drug target, Proc Natl Acad Sci, 2020, 117, 25523-25531

  •  B. Schiffrin, S. E. Radford, D. J. Brockwell, A N. Calabrese, PyXlinkViewer: a flexible tool for visualisation of protein chemical crosslinking data within the PyMOL molecular graphics system, Protein Science, 2020, 29, 1851-1857

  •  R. Rodríguez-Alonso, J. Létoquart, V. S. Nguyen, G. Louis, A. N. Calabrese, S. E. Radford, S.-Y. Cho, H. Remaut, J.-F. Collet, Structural insight into the formation of lipoprotein-β-barrel complexes by the β-barrel assembly machinery, Nat. Chem Biol., 2020, 16, 1019-1025

  •  A.N. Calabrese, B. Schiffrin, M. Watson, M. Walko, J.R. Humes, T.K. Karamanos, J.E. Horne, P. White, A.C. Kalli, R. Tuma, A.E. Ashcroft, D.J. Brockwell, S.E. Radford, Inter-domain dynamics in the chaperone SurA and multi-site binding to its unfolded outer membrane protein clients, Nat. Commun., 2020, 11, 2155

2019

  • T.K. Karamanos, M.P. Jackson, A.N. Calabrese, S.C. Goodchild, E.E. Cawood, G.S. Thompson, A.P. Kalverda, E.W. Hewitt, S.E. Radford, Structural mapping of oligomeric intermediates in an amyloid assembly pathway, eLife, 2019, 8:e46574

  • K. Shen, M. Gamerdinger, R. Chan, K. Gense, E. M. Martin, N. Sachs, P. D. Knight, R. Schömer, A. N. Calabrese, K. L. Stewart, L. Leiendecker, A. Baghel, S. E. Radford, J. Frydman, E. Deuerling, Dual role of ribosome-binding domain of NAC as a potent suppressor of protein aggregation and aging-related proteinopathies, Mol. Cell, 2019, 74, 729-741

  •  J. R. Humes, B. Schiffrin, A. N. Calabrese, A. J. Higgins, D. R. Westhead, D. J. Brockwell, S. E. Radford, The Role of SurA PPIase Domains in Preventing Aggregation of the Outer Membrane Proteins tOmpA and OmpT, J. Mol. Biol., 2019, 431, 1267-1283

2018

  • J. E. Horne*, M. Walko*, A. N. Calabrese*, M. A. Levenstein, D. J. Brockwell, N. Kapur, A. J. Wilson, S. E. Radford, Rapid mapping of protein interactions using tag-transfer photocrosslinkers, Angew. Chem. Int. Ed., 2018, 57, 16688-16692

  • J. P. K. Bravo, A. Borodavka, A. Barth, A. N. Calabrese, P. Mojzes, J. J. B. Cockburn, D. C. Lamb, R. Tuma, Stability of local secondary structure determines selectivity of viral RNA chaperones, Nucleic Acids Res., 2018, 46, 7924-7937

  • A. N. Calabrese*, S. E. Radford, Mass spectrometry-enabled structural biology of membrane proteins, Methods, 2018, 147, 187-205

  • L. L. Martin, C. Kubeil, S. Piantavigna, T. Tikkoo, N. P. Gray, T. John, A. N. Calabrese, Y. Liu, Y. Hong, M. A. Hossain, N. Patil, B. Abel, R. Hoffmann, J. H. Bowie, J. A. Carver, Amyloid Aggregation and Membrane Activity of the Antimicrobial Peptide Uperin 3.5, Peptide Sci., 2018, 110:e24052

2017

  • B. Schiffrin, A. N. Calabrese, A. J. Higgins, J. R. Humes, A. E. Ashcroft, A. C. Kalli, D. J. Brockwell, S. E. Radford, Effects of periplasmic chaperones and membrane thickness on in vitro BamA-catalysed outer membrane protein folding, J. Mol. Biol., 2017, 429, 3776-3792

  • A. N. Calabrese, S. M. Jackson, L. N. Jones, F. Heinkel, O. Beckstein, J. Gsponer, D. Sharples, M. Sans, M. Kokkinidou, A. R. Pearson, S. E. Radford, A. E. Ashcroft, P. J. F. Henderson, Topological dissection of the membrane transport protein Mhp1 derived from cysteine accessibility and mass spectrometry, Anal. Chem., 2017, 89, 8844–8852

  • P. W. A. Devine, H. C. Fisher, A. N. Calabrese, F. Whelan, D. R. Higazi, J. R. Potts, D. C. Lowe, S. E. Radford, A. E. Ashcroft, Investigating the structural compaction of biomolecules upon transition to the gas-phase using ESI-TWIMS-MS, J. Am. Soc. Mass Spectrom., 2017, 28, 1855-1862

  • T. G. Watkinson, A. N. Calabrese, J. R. Ault, S. E. Radford, A. E. Ashcroft, FPOP-LC-MS/MS suggests differences in interaction sites of amphipols and detergents with outer membrane proteins, J. Am. Soc. Mass Spectrom., 2017, 28, 50-55

2016

  • M. G. Iadanza, A. J. Higgins, B. Schiffrin, A. N. Calabrese, D. J. Brockwell, A. E. Ashcroft, S. E. Radford, N. A. Ranson, Lateral opening of the intact β-barrel assembly machinery captured by cryo-EM, Nat. Commun., 2016, 7:12865, doi: 10.1038/ncomms12865

  • B. Schiffrin*, A.N. Calabrese*, P. Devine, S. A Harris, A. E. Ashcroft, D. J. Brockwell, S.  E. Radford, Skp is a multivalent chaperone of outer membrane proteins, Nat. Struct. Mol. Biol., 2016, 23, 786–793

  • A. N. Calabrese, Y. Liu, I. F. Musgrave, T. L. Pukala, L. L. Martin, J. A. Carver, J. H. Bowie, The amyloid fibril-forming properties of the amphibian antimicrobial peptide uperin 3.5, ChemBioChem, 2016, 17, 239-246

2015

  • Y. Liu, T. Wang, A. N. Calabrese, J.A. Carver, S. F. Cummins, J. H. Bowie, The membrane-active amphibian peptide caerin 1.8 inhibits fibril formation of amyloid β1-42, Peptides, 2015, 73, 1-6

  • T. G. Watkinson, A. N. Calabrese, F. Giusti, M. Zoonens, S. E. Radford, A. E. Ashcroft, Systematic analysis of the use of amphipathic polymers for studies of outer membrane proteins using mass spectrometry, Int J. Mass Spectrom., 2015, 391, 54-61

  • A. N. Calabrese, J. R. Ault, S. E. Radford, A. E. Ashcroft, Using hydroxyl radical footprinting to explore the free energy landscape of protein folding, Methods, 2015, 89, 38-44

  • A. N. Calabrese, J. H. Bowie, T. L. Pukala, Structural analysis of calmodulin Binding by nNOS inhibitory amphibian peptides, Biochem., 2015, 54, 567-576

  • A. N. Calabrese, T. G. Watkinson, P. J. F. Henderson, S. E. Radford, A. E. Ashcroft, Amphipols outperform dodecylmaltoside micelles in stabilizing membrane protein structure in the gas phase, Anal. Chem., 2015, 87, 1118-1126

2011-2014

  • F. Giusti, J. Rieger, L. J. Catoire, S. Qian, A. N. Calabrese, T. G. Watkinson, M. Casiraghi, S. E. Radford, A. E. Ashcroft, J.-L. Popot, Synthesis, characterization and applications of a perdeuterated amphipol, J. Membrane Biol., 2014, 247, 909–924

  • Y. Liu, J. A. Carver, A. N. Calabrese, T. L. Pukala, Gallic acid interacts with α-synuclein to prevent the structural collapse necessary for its aggregation, BBA-Proteins Proteom., 2014, 1844, 1481–1485

  • A. N. Calabrese, T. L Pukala, Chemical cross-linking and mass spectrometry for the structural analysis of protein assemblies, Aust. J. Chem., 2013, 66, 749-759

  • J.M. Cottam, D.B. Scanlon, J. A. Karas, A.N. Calabrese, T.L. Pukala, B.E. Forbes, J.C. Wallace, A.D. Abell, Chemical synthesis of a fluorescent IGF-II analogue, Int. J. Pept. Res. Ther., 2013, 19, 61-69

  • A.N. Calabrese, T. Wang, J.H. Bowie, T.L. Pukala, Negative ion fragmentations of disulfide-containing cross-linking reagents are competitive with aspartic acid side chain induced cleavages, Rapid Commun. Mass Spectrom., 2013, 27, 238-248

  • A.N. Calabrese, K. Markulic, I.F. Musgrave, H. Guo, L. Zhang, J.H. Bowie, Structural and activity changes in three bioactive anuran peptides when Asp is replaced by isoAsp, Peptides, 2012, 38, 427-436

  • A.N. Calabrese, N.J. Good, T. Wang, J. He, J.H. Bowie, T.L. Pukala, A negative ion mass spectrometry approach to identify cross-linked peptides utilizing characteristic disulfide fragmentations, J. Am. Soc. Mass Spectrom., 2012, 23, 1364-1375

  • A.N. Calabrese, L.A. Speechley, T.L. Pukala, Characterisation of calmodulin structural transitions by Ion Mobility Mass Spectrometry, Aust. J. Chem., 2012, 65, 504-511

  • T. Wang, T.T.N. Tran, A.N. Calabrese, J.H. Bowie, Backbone fragmentations of [M–H]– anions from peptides. Reinvestigation of the mechanism of the beta prime cleavage, Rapid Commun. Mass Spectrom., 2012, 26, 1832-1840

  • T. Wang, H.J. Andreazza, T.L. Pukala, P.J. Sherman, A.N. Calabrese, J.H. Bowie, Histidine-containing host-defence skin peptides of anurans bind Cu2+.  An electrospray ionisation mass spectrometry and computational modelling study. Rapid Commun. Mass Spectrom., 2011, 12, 1209-1221

BOOK CHAPTERS

  • A. D. Cameron, S. M. Jackson, A. N. Calabrese, O. Beckstein, P. J. F. Henderson, Membrane Transport Proteins: The Amino Acid Polyamine-Organocation (APC) Superfamily, Encyclopaedia of Biophysics, 2019, https://doi.org/10.1007/978-3-642-35943-9_772-1

  • G. F. Papadaki, P. Ma, I. Ahmad, A. N. Calabrese, S. A. Baldwin, P. J. F. Henderson, G. Diallinas, Membrane Transport: The Nucleobase-Cation-Symport 1 family of membrane transport proteins, Encyclopaedia of Biophysics, 2019, https://doi.org/10.1007/978-3-642-35943-9_684-2

  • S. M. Jackson, E. Ivanova , A. N. Calabrese, A. Polyakova, D. J. Sharples, T. Shimamura, F. Brueckner, K. J. Simmons, M. Sahai, H. Majd, E. Kunji, I. Ahmad, S. Weyand, S. Suzuki, A. E. Ashcroft, M. Kokkinidou, A. Pearson, O. Beckstein, S. A. Baldwin , S. Iwata, A. D. Cameron, P. J. F. Henderson, Structure, Substrate Recognition, and Mechanism of the Na+-Hydantoin Membrane Transport Protein, Mhp1, Encyclopaedia of Biophysics, 2019, https://doi.org/10.1007/978-3-642-35943-9_10091-1

EDUCATIONAL PUBLICATIONS

  • R.J. Stanley, D. Joyce, S. Reynolds, A.N. Calabrese, Senior Chemistry: A Course Companion for SACE Stage 2. The Enterprise Press, Parkside, South Australia, 2013

  • R.J. Stanley, S. Reynolds, A.N. Calabrese, The Elements of Senior Chemistry: Student Workbook, Book Three: The Options A-G. The Enterprise Press, Parkside, South Australia, 2009

Publications: Publications
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